BtaEX6008894 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006168 | RBM45
Description
Bos taurus RNA binding motif protein 45 (RBM45), mRNA. [Source:RefSeq mRNA;Acc:NM_001130753]
Coordinates
chr2:18767822-18772203:-
Coord C1 exon
chr2:18772081-18772203
Coord A exon
chr2:18770122-18770248
Coord C2 exon
chr2:18767822-18767944
Length
127 bp
Sequences
Splice sites
3' ss Seq
ATTTCTTTTAACTCTCATAGGTG
3' ss Score
8.86
5' ss Seq
GAAGTAAGG
5' ss Score
6.38
Exon sequences
Seq C1 exon
GTTTTCATTGCTCAGTCCAGATCATCTGGAAGTCACCGAGATGTTGAAGATGAAGAACTTACAAGAATATTTGTTATGATACCAAAGTCCTACACAGAAGAAGATCTACGGGAAAAATTTAAG
Seq A exon
GTGTTTGGAGATATCGAGTATTGCAGCATTATTAAGAATAAAGTAACTGGAGAAAGTAAAGGCTTGGGCTATGTTCGGTACTTAAAACCATCACAAGCTGCCCAAGCAATAGAAAACTGTGATCGAA
Seq C2 exon
GTTATAGAGCAATCTTGGCTGAACCTAAAAACAAAGCATCTGAATCCTCAGAACAAGATTATTACAGTAATATGAGGCAGGAGACTTTAGGACATGAACCTAGGGTAAATATGTTTTCATTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006168-'1-3,'1-2,2-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.073 A=0.000 C2=0.357
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=PU(37.8=68.3)
A:
PF0007617=RRM_1=FE(56.8=100)
C2:
PF0007617=RRM_1=PD(2.7=4.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCATTGCTCAGTCCAGATCA
R:
ACATATTTACCCTAGGTTCATGTCCT
Band lengths:
234-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]