DreEX6034695 @ danRer10
Exon Skipping
Gene
ENSDARG00000063731 | rbm45
Description
RNA binding motif protein 45 [Source:ZFIN;Acc:ZDB-GENE-070122-4]
Coordinates
chr9:1476920-1479235:-
Coord C1 exon
chr9:1479113-1479235
Coord A exon
chr9:1477118-1477244
Coord C2 exon
chr9:1476920-1477042
Length
127 bp
Sequences
Splice sites
3' ss Seq
TTCTCTCTCTCTCTCTCCAGGTG
3' ss Score
15.49
5' ss Seq
AGAGTAAGA
5' ss Score
5.73
Exon sequences
Seq C1 exon
GTGTTCATCGCTCAGTCCAGGTCTTCTGGAAGCCATCGAGATGTGGAGGATGAGGAGCTCACAAGAATATTTGTGATGATCCCGAAAACATTCACTGAGGATGATTTAAAAGAAACATTTAAG
Seq A exon
GTGTATGGAGATATAGAGTACGCTATCATTATACGAAATAAGACCACTGGTGACAGCAAAGGTCTGGGATACGTCAGATTCCACAAACCATCACAAGCTGCCAAAGCCGTTGAAAACTGTGATAAGA
Seq C2 exon
CTTTCAGAGCTATTATAGCAGAGCCCAGAACCAAGAATTCCTCAGCAGACAACGACTATTTCAGCAACCCCAGGACGACGGAGCACTCCACCAGTGAACTAGGCTCCAGCTCATACGCATTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000063731-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.073 A=0.000 C2=0.381
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=PU(37.8=68.3)
A:
PF0007617=RRM_1=FE(56.8=100)
C2:
PF0007617=RRM_1=PD(2.7=4.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTTCATCGCTCAGTCCAGG
R:
AAATGCGTATGAGCTGGAGCC
Band lengths:
245-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]