GgaEX6042222 @ galGal3
Exon Skipping
Gene
ENSGALG00000009202 | RBM45
Description
NA
Coordinates
chr7:16638492-16640416:-
Coord C1 exon
chr7:16640294-16640416
Coord A exon
chr7:16640040-16640166
Coord C2 exon
chr7:16638492-16638602
Length
127 bp
Sequences
Splice sites
3' ss Seq
ACGTTTCTTAATTGTTCCAGATG
3' ss Score
8.19
5' ss Seq
GAAGTAAGA
5' ss Score
6.42
Exon sequences
Seq C1 exon
GTATTTATTGCACAGTCAAGAGCTTCTGGGAGCCACCGAGATGTTGAAGATGAGGAGCTTACCCGAATCTTTGTTATGATACCAAAGACCTATACAGAGGAAGACCTGCGAGAGAAGTTTAAG
Seq A exon
ATGTATGGAGACATTGAATATTGCAGCATTATTAAAAACAAGACTACTGGAGAAAGCAAAGGTTTGGGCTATGTGAGGTACTTAAAACCATCGCAAGCTGCCCGAGCAATTGAAGAGTGTGATCGAA
Seq C2 exon
GCTACCGGGCCATTTTGGCTGAACCGAAAAATAAGTCATCTGAATCTTTTGAACATGAATATTATAGCAATAACGCAAGGCAAGAACCAAGAGGAAATGTCTTTCCATTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009202-'1-3,'1-2,2-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.211
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=PU(37.0=65.9)
A:
PF0007617=RRM_1=FE(57.5=100)
C2:
PF0007617=RRM_1=PD(2.7=5.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTTATTGCACAGTCAAGAGCTTCTG
R:
GAAAGACATTTCCTCTTGGTTCTTGC
Band lengths:
226-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]