RnoEX0074685 @ rn6
Exon Skipping
Gene
ENSRNOG00000010595 | Rbm45
Description
RNA binding motif protein 45 [Source:RGD Symbol;Acc:628862]
Coordinates
chr3:63223552-63227437:+
Coord C1 exon
chr3:63223552-63223674
Coord A exon
chr3:63225088-63225214
Coord C2 exon
chr3:63227315-63227437
Length
127 bp
Sequences
Splice sites
3' ss Seq
GTCTCTTTTGGCTCTCGCAGGTG
3' ss Score
10.64
5' ss Seq
GAAGTAAGA
5' ss Score
6.42
Exon sequences
Seq C1 exon
GTTTTCATTGCCCAGTCCCGATCATCAGGGAGTCACAGGGATGTCGAAGACGAAGAGCTCACGAGGATCTTTGTCATGATACCAAAGTCCTACACGGAGGAAGACCTGCGGGAGAAGTTCAAG
Seq A exon
GTGTATGGAGACATCGAGTACTGCAGCGTTATTAAGAATAAAGTCACTGGAGAAAGTAAAGGCTTGGGCTACGTGCGGTACTTAAAACCATCACAAGCTGCCCAGGCAATAGAAAACTGTGATAGAA
Seq C2 exon
GTTTCAGAGCACTCTTGGCTGAACCTAAAAATAAAGTGTTGGAGTCCCCAGAACAAGATTATTACAGTAGCGTGAGGCAGGAGACTTTGGGGCACGAGCCTAGAGGAAATCTGTTTCCCTTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010595-'6-3,'6-2,8-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.073 A=0.000 C2=0.155
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=PU(37.8=68.3)
A:
PF0007617=RRM_1=FE(56.8=100)
C2:
PF0007617=RRM_1=PD(2.7=4.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTTCATTGCCCAGTCCCGA
R:
CAGATTTCCTCTAGGCTCGTGC
Band lengths:
236-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]