MmuEX0039164 @ mm10
Exon Skipping
Gene
ENSMUSG00000042369 | Rbm45
Description
RNA binding motif protein 45 [Source:MGI Symbol;Acc:MGI:2387367]
Coordinates
chr2:76372035-76375478:+
Coord C1 exon
chr2:76372035-76372157
Coord A exon
chr2:76373560-76373686
Coord C2 exon
chr2:76375356-76375478
Length
127 bp
Sequences
Splice sites
3' ss Seq
ATCTCTTTTGACTCTTGTAGGTG
3' ss Score
10.24
5' ss Seq
GAAGTAAGA
5' ss Score
6.42
Exon sequences
Seq C1 exon
GTTTTCATTGCCCAGTCCCGATCATCAGGAAGTCACAGGGATGTTGAAGATGAAGAACTCACGAGAATCTTTGTTATGATACCAAAGTCCTATACAGAAGAAGACCTGCGGGAGAAGTTCAAG
Seq A exon
GTGTATGGAGATATCGAGTATTGCAGCATTATTAAGAATAAAGTCACTGGAGAAAGTAAAGGCTTGGGCTACGTGCGCTATTTAAAACCATCACAAGCTGCCCAGGCAATAGAAAACTGTGATAGAA
Seq C2 exon
GTTTCAGAGCACTCTTGGCTGAACCTAAAAATAAAGTGTCGGGGTCCCCAGAACAAGATGATTACAGCAGCGGGAGGCAGGAGGCTTTGGGACAGGAACCCAGAGCAAATCTGTTTCCCTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042369_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.098 A=0.000 C2=0.452
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=PU(37.8=68.3)
A:
PF0007617=RRM_1=FE(56.8=100)
C2:
PF0007617=RRM_1=PD(2.7=4.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTTCATTGCCCAGTCCCGA
R:
CAAAGGGAAACAGATTTGCTCT
Band lengths:
246-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types