HsaEX6016871 @ hg19
Exon Skipping
Gene
ENSG00000155636 | RBM45
Description
RNA binding motif protein 45 [Source:HGNC Symbol;Acc:24468]
Coordinates
chr2:178980989-178985136:+
Coord C1 exon
chr2:178980989-178981111
Coord A exon
chr2:178982782-178982908
Coord C2 exon
chr2:178985014-178985136
Length
127 bp
Sequences
Splice sites
3' ss Seq
ATGTCTTTTAACTCTCTTAGGTG
3' ss Score
8.77
5' ss Seq
GAAGTAAGG
5' ss Score
6.38
Exon sequences
Seq C1 exon
GTTTTCATTGCTCAGTCCCGATCATCTGGAAGTCACCGAGATGTTGAAGATGAAGAACTTACAAGAATCTTTGTTATGATACCAAAGTCCTACACAGAAGAAGATCTGCGGGAAAAATTTAAG
Seq A exon
GTGTATGGAGATATCGAGTATTGCAGCATTATTAAGAATAAAGTGACTGGAGAAAGTAAAGGTTTGGGCTACGTACGATACTTAAAACCATCACAAGCTGCCCAAGCAATAGAAAACTGTGATCGAA
Seq C2 exon
GTTTTAGAGCAATCTTGGCTGAACCTAAAAATAAAGCATCTGAATCCTCTGAACAAGATTATTATAGTAATATGAGGCAAGAAGCTTTGGGACATGAACCTAGAGTAAATATGTTTCCATTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000155636-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.122 A=0.000 C2=0.333
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=PU(37.8=68.3)
A:
PF0007617=RRM_1=FE(56.8=100)
C2:
PF0007617=RRM_1=PD(2.7=4.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCATTGCTCAGTCCCGATCA
R:
ACATATTTACTCTAGGTTCATGTCCC
Band lengths:
234-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)