HsaEX6016871 @ hg38
Exon Skipping
Gene
ENSG00000155636 | RBM45
Description
RNA binding motif protein 45 [Source:HGNC Symbol;Acc:HGNC:24468]
Coordinates
chr2:178116262-178120409:+
Coord C1 exon
chr2:178116262-178116384
Coord A exon
chr2:178118055-178118181
Coord C2 exon
chr2:178120287-178120409
Length
127 bp
Sequences
Splice sites
3' ss Seq
ATGTCTTTTAACTCTCTTAGGTG
3' ss Score
8.77
5' ss Seq
GAAGTAAGG
5' ss Score
6.38
Exon sequences
Seq C1 exon
GTTTTCATTGCTCAGTCCCGATCATCTGGAAGTCACCGAGATGTTGAAGATGAAGAACTTACAAGAATCTTTGTTATGATACCAAAGTCCTACACAGAAGAAGATCTGCGGGAAAAATTTAAG
Seq A exon
GTGTATGGAGATATCGAGTATTGCAGCATTATTAAGAATAAAGTGACTGGAGAAAGTAAAGGTTTGGGCTACGTACGATACTTAAAACCATCACAAGCTGCCCAAGCAATAGAAAACTGTGATCGAA
Seq C2 exon
GTTTTAGAGCAATCTTGGCTGAACCTAAAAATAAAGCATCTGAATCCTCTGAACAAGATTATTATAGTAATATGAGGCAAGAAGCTTTGGGACATGAACCTAGAGTAAATATGTTTCCATTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000155636-'4-3,'4-2,5-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.122 A=0.000 C2=0.333
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=PU(37.8=68.3)
A:
PF0007617=RRM_1=FE(56.8=100)
C2:
PF0007617=RRM_1=PD(2.7=4.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCATTGCTCAGTCCCGATCA
R:
ACATATTTACTCTAGGTTCATGTCCC
Band lengths:
234-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains