BtaEX6008909 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016396 | PDE11A
Description
Bos taurus phosphodiesterase 11A (PDE11A), mRNA. [Source:RefSeq mRNA;Acc:NM_001205422]
Coordinates
chr2:19065470-19106753:+
Coord C1 exon
chr2:19065470-19065537
Coord A exon
chr2:19066491-19066583
Coord C2 exon
chr2:19106697-19106753
Length
93 bp
Sequences
Splice sites
3' ss Seq
GTGAACTCTCTCTTTCCTAGGCT
3' ss Score
9.62
5' ss Seq
GATGTAAGT
5' ss Score
9.11
Exon sequences
Seq C1 exon
GAGTGGCTCAAGTGTTAAATAGACTCGATGGGAAACCTTTCGATGATGCCGATCAACGACTTTTCGAG
Seq A exon
GCTTTTGTCATCTTTTGTGGCCTTGGCATCAACAATACAATTATGTACGATCAAGTGAAGAAGTCATGGGCCAAGCAGTCCGTGGCTCTTGAT
Seq C2 exon
AACCAGGTGCTATCTTATCATGCAACATGTTCAAAAGCTGAAGTTGACAAGTTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016396-'7-8,'7-7,8-8=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0159021=GAF=FE(14.0=100)
A:
PF0159021=GAF=PD(5.7=29.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGGCTCAAGTGTTAAATAGACTCG
R:
ACTTGTCAACTTCAGCTTTTGAACA
Band lengths:
119-212
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]