HsaEX6016854 @ hg19
Exon Skipping
Gene
ENSG00000128655 | PDE11A
Description
phosphodiesterase 11A [Source:HGNC Symbol;Acc:8773]
Coordinates
chr2:178634051-178682652:-
Coord C1 exon
chr2:178682585-178682652
Coord A exon
chr2:178681556-178681648
Coord C2 exon
chr2:178634051-178634101
Length
93 bp
Sequences
Splice sites
3' ss Seq
GCAGGTTTGCTCTTTCCTAGGCT
3' ss Score
5.52
5' ss Seq
GATGTAAGT
5' ss Score
9.11
Exon sequences
Seq C1 exon
GAGTGGCTCAAGTGTTAAACAGACTTGATGGGAAACCTTTTGATGATGCAGATCAACGACTTTTTGAG
Seq A exon
GCTTTTGTCATCTTTTGTGGACTTGGCATCAACAACACAATTATGTATGATCAAGTGAAGAAGTCCTGGGCCAAGCAGTCTGTGGCTCTTGAT
Seq C2 exon
GTGCTATCATACCATGCAACATGTTCAAAAGCTGAAGTTGACAAGTTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000128655-'15-21,'15-19,16-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0159021=GAF=FE(14.0=100)
A:
PF0159021=GAF=PD(5.7=29.0)
C2:
PF0159021=GAF=PD(5.2=44.4)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTGGCTCAAGTGTTAAACAGAC
R:
CTTAAACTTGTCAACTTCAGCTTTTG
Band lengths:
119-212
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)