DreEX6034706 @ danRer10
Exon Skipping
Gene
ENSDARG00000063732 | pde11a
Description
phosphodiesterase 11a [Source:ZFIN;Acc:ZDB-GENE-070912-207]
Coordinates
chr9:1539770-1546472:+
Coord C1 exon
chr9:1539770-1539837
Coord A exon
chr9:1541269-1541361
Coord C2 exon
chr9:1546422-1546472
Length
93 bp
Sequences
Splice sites
3' ss Seq
GGTCTTTTCTCTCTCTGTAGGCA
3' ss Score
10.79
5' ss Seq
GATGTATGT
5' ss Score
6.31
Exon sequences
Seq C1 exon
GTGTGGCTCAGGTCTTGAACAGACTCGACGGGAAACCATTTGATGATGCAGATCAGAGGCTGTTCGAG
Seq A exon
GCATTTGTGATTTTCTGTGGACTGGGAATTAATAACACCATTATGTATGACCAAGTGAAGAAGTCCTGGGCCAAGCAGTCCGTGGCTTTGGAT
Seq C2 exon
GTACTGTCGTATCATGCCACCTGCTCAAAGACTGAGGTGGACAAGTTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000063732-'15-15,'15-14,16-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0159021=GAF=FE(15.2=100)
A:
PF0159021=GAF=PD(6.2=29.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTGGCTCAGGTCTTGAACA
R:
CTTAAACTTGTCCACCTCAGTCT
Band lengths:
119-212
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]