RnoEX0064205 @ rn6
Exon Skipping
Gene
ENSRNOG00000024457 | Pde11a
Description
phosphodiesterase 11A [Source:RGD Symbol;Acc:621793]
Coordinates
chr3:62943400-62968912:-
Coord C1 exon
chr3:62968845-62968912
Coord A exon
chr3:62967857-62967949
Coord C2 exon
chr3:62943400-62943450
Length
93 bp
Sequences
Splice sites
3' ss Seq
ACAGGCTTTCTGTGTCCTAGGCC
3' ss Score
8.33
5' ss Seq
GATGTAAGT
5' ss Score
9.11
Exon sequences
Seq C1 exon
GGGTCGCTCAAGTGCTGAACAGACTCGATGGGAAACCTTTTGATGATGCTGACCAAAGGCTTTTTGAG
Seq A exon
GCCTTTGTCATCTTTTGTGGCCTTGGTATTAACAACACGATTATGTACGACCAAGTGAAGAAGTCCTGGGCCAAGCAGTCCGTGGCTCTTGAT
Seq C2 exon
GTGCTGTCCTACCACGCCACGTGTTCCAAGGCTGAAGTTGACAAGTTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000024457-'21-21,'21-19,22-21
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0159021=GAF=FE(14.0=100)
A:
PF0159021=GAF=PD(5.7=29.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTCGCTCAAGTGCTGAAC
R:
CTTAAACTTGTCAACTTCAGCCTTGG
Band lengths:
119-212
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]