HsaEX6016854 @ hg38
Exon Skipping
Gene
ENSG00000128655 | PDE11A
Description
phosphodiesterase 11A [Source:HGNC Symbol;Acc:HGNC:8773]
Coordinates
chr2:177769323-177817925:-
Coord C1 exon
chr2:177817858-177817925
Coord A exon
chr2:177816829-177816921
Coord C2 exon
chr2:177769323-177769373
Length
93 bp
Sequences
Splice sites
3' ss Seq
GCAGGTTTGCTCTTTCCTAGGCT
3' ss Score
5.52
5' ss Seq
GATGTAAGT
5' ss Score
9.11
Exon sequences
Seq C1 exon
GAGTGGCTCAAGTGTTAAACAGACTTGATGGGAAACCTTTTGATGATGCAGATCAACGACTTTTTGAG
Seq A exon
GCTTTTGTCATCTTTTGTGGACTTGGCATCAACAACACAATTATGTATGATCAAGTGAAGAAGTCCTGGGCCAAGCAGTCTGTGGCTCTTGAT
Seq C2 exon
GTGCTATCATACCATGCAACATGTTCAAAAGCTGAAGTTGACAAGTTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000128655_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0159021=GAF=FE(14.0=100)
A:
PF0159021=GAF=PD(5.7=29.0)
C2:
PF0159021=GAF=PD(5.2=44.4)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTGGCTCAAGTGTTAAACAGAC
R:
CTTAAACTTGTCAACTTCAGCTTTTG
Band lengths:
119-212
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains