GgaEX1042649 @ galGal3
Exon Skipping
Gene
ENSGALG00000009215 | PDE11A
Description
NA
Coordinates
chr7:16720058-16723501:+
Coord C1 exon
chr7:16720058-16720125
Coord A exon
chr7:16720485-16720577
Coord C2 exon
chr7:16723451-16723501
Length
93 bp
Sequences
Splice sites
3' ss Seq
CCACCTTTCTCTCATTTTAGGCC
3' ss Score
12.18
5' ss Seq
GATGTATGT
5' ss Score
6.31
Exon sequences
Seq C1 exon
GGGTAGCTCAAGTGTTGAACAGACTTGATGGGAAGCCTTTTGATGATGCTGACCAGCGATTGTTTGAG
Seq A exon
GCCTTTGTTATTTTCTGTGGCCTGGGCATCAACAACACAATTATGTATGACCAAGTGAAGAAATCCTGGGCAAAACAGTCTGTGGCTCTTGAT
Seq C2 exon
GTTTTATCTTATCATGCAACATGTTCGAAGGCAGAAGTTGATAAATTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009215-'8-8,'8-7,9-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0159021=GAF=FE(13.9=100)
A:
PF0159021=GAF=PD(5.7=29.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTAGCTCAAGTGTTGAACAGA
R:
CTTAAATTTATCAACTTCTGCCTTCG
Band lengths:
119-212
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]