MmuEX0034137 @ mm10
Exon Skipping
Gene
ENSMUSG00000075270 | Pde11a
Description
phosphodiesterase 11A [Source:MGI Symbol;Acc:MGI:3036251]
Coordinates
chr2:76113504-76137406:-
Coord C1 exon
chr2:76137339-76137406
Coord A exon
chr2:76136367-76136459
Coord C2 exon
chr2:76113504-76113554
Length
93 bp
Sequences
Splice sites
3' ss Seq
ACAGGCTTTCTGTGTCCTAGGCC
3' ss Score
8.33
5' ss Seq
GATGTAAGT
5' ss Score
9.11
Exon sequences
Seq C1 exon
GGGTGGCTCAAGTGTTGAACAGACTCGACGGAAAACCTTTTGATGATGCAGACCAAAGGCTTTTTGAG
Seq A exon
GCCTTTGTCATCTTTTGTGGCCTTGGTATTAACAACACAATTATGTACGATCAAGTGAAGAAGTCCTGGGCCAAGCAGTCTGTGGCCCTTGAT
Seq C2 exon
GTGCTGTCGTACCACGCCACGTGTTCCAAGGCTGAAGTCGACAAGTTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000075270_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0159021=GAF=FE(14.0=100)
A:
PF0159021=GAF=PD(5.7=29.0)
C2:
PF0159021=GAF=PD(5.2=44.4)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTGGCTCAAGTGTTGAACA
R:
CTTAAACTTGTCGACTTCAGCCT
Band lengths:
119-212
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types