BtaEX6009298 @ bosTau6

Exon Skipping

Gene

Description

Bos taurus SPC25, NDC80 kinetochore complex component, homolog (S. cerevisiae) (SPC25), mRNA. [Source:RefSeq mRNA;Acc:NM_001034230]

Coordinates

chr2:27305099-27309226:+

Coord C1 exon

chr2:27305099-27305203

Coord A exon

chr2:27307065-27307163

Coord C2 exon

chr2:27308888-27309226

Length

99 bp

Sequences

Splice sites

3' ss Seq

AATTTAATCCCTTTTTTCAGGTG

3' ss Score

9.64

5' ss Seq

AAGGTATGT

5' ss Score

9.79

Exon sequences

Seq C1 exon

CTATTTCCACTGCTAACAAAGCTAATGAAGAGAGGTTGAAAAGGCTACAGAAATCTGCAGACTTGTATAAAGATCGACTTGGACTAGAAATTCGAAAAATTTATG

Seq A exon

GTGATAAATTGCAGTTTATATTCACTGATATTGACCCTAAGCATCCTGATCGCCCATTTATGTTTTCCCTATGCCTAAACGAAGCAAGGGACTATGAAG

Seq C2 exon

TGTCAGATTGTGCTCCTCGTCTTGAGTGCCTCGCAGAATTTCAAGAAAAAGTAAGGCAGACCAACAATTTTTCAGCTTTTCTTGCCAACGTTCGGAAAGCTTTTACTGCCCTTGTTTATAATTAACATATACACAGTGTATAAAAACCGTTATCCCTTTGTATTTCTCTTTTTTGAAAAACTGTCATTATTCGATGTTTGTCTATAATCTTTATTTTTGTAACATTTCTGTGTGCTGATTTTTGTCAATTATTTTAATTAAAATCTTGGGAAAGAAGGTTTAAGTCAAGCTATTAGAAGTCATGGATCAGTAATAATAAAAAATGAAGGGAGTGAGTCC

VastDB Features

Vast-tools module Information

Secondary ID

ENSBTAG00000010048-'10-8,'10-7,12-8=AN

Average complexity

A_S

Mappability confidence:

100%=100=100%

Protein Impact

Alternative protein isoforms (Ref)

No structure available

Features

Disorder rate (Iupred):

C1=0.028 A=0.000 C2=0.000

Domain overlap (PFAM):

C1:

PF083176=Spc7=FE(20.0=100),PF131661=AAA_13=FE(22.0=100),PF086146=ATG16=PD(16.3=58.3),PF039618=DUF342=FE(24.5=100),PF101864=Atg14=PD(22.4=77.8),PF082347=Spindle_Spc25=PU(6.7=13.9)

A:

PF083176=Spc7=PD(14.3=73.5),PF131661=AAA_13=PD(7.5=35.3),PF039618=DUF342=PD(4.2=17.6),PF082347=Spindle_Spc25=FE(44.0=100)

C2:

PF082347=Spindle_Spc25=PD(48.0=85.7)

Main Inclusion Isoform:

ENSBTAP00000013248