HsaEX6016487 @ hg19
Exon Skipping
Gene
ENSG00000152253 | SPC25
Description
SPC25, NDC80 kinetochore complex component, homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:24031]
Coordinates
chr2:169727404-169732686:-
Coord C1 exon
chr2:169732582-169732686
Coord A exon
chr2:169730095-169730193
Coord C2 exon
chr2:169727404-169728065
Length
99 bp
Sequences
Splice sites
3' ss Seq
ATAGTTTAATCTCTTTTCAGGTG
3' ss Score
9.08
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
CTATTTCTACTGCTAATAAAGCGAATGCAGAGAGGTTGAAAAGGCTGCAGAAATCTGCAGACTTGTATAAAGATCGACTTGGACTAGAAATTCGAAAAATTTATG
Seq A exon
GTGAGAAATTGCAGTTTATTTTCACTAATATTGACCCTAAGAATCCTGAGAGCCCATTTATGTTTTCCTTACATCTCAATGAAGCAAGGGACTATGAAG
Seq C2 exon
TGTCAGATAGTGCCCCTCATCTTGAGGGCCTAGCAGAATTTCAAGAGAATGTAAGGAAGACCAACAATTTTTCAGCTTTTCTTGCCAATGTTCGGAAAGCTTTTACTGCCACGGTTTATAATTAACATACAAATAGTGTATATAAAAACGGTTTATTTTTCTTCTCTATTACATATCTCTTTTTTTCTTGTTTTTATTATTATTATACTTTAAGTTTTAGGGTACATGTGCACAATGTGCAGGTTTGTTACATATGTATACATGTGCCATATTGGTGTGCTGCACCCATTAACTCGTCATTTCATTAGGTATATCTCCTAATGCTATCCCTCCCCCCTCCCCCAACCCACAACAGTCCCCGTTGTGTGATGTTCCCCTTCCTGTGTCCATGTGTTCTCATTGTTCAATTCCCACCTAGGAGTGAGAATATGTGGTGTTTGGTTTTTTGTCCTTTCGATAGTTTGCTGAGAATGATGGTTTCCAGCTTCATCCATGTTCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000152253-'10-8,'10-7,11-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.056 A=0.000 C2=0.049
Domain overlap (PFAM):
C1:
PF131661=AAA_13=FE(22.0=100),PF083176=Spc7=FE(21.5=100),PF101864=Atg14=PD(27.2=94.4),PF082347=Spindle_Spc25=PU(6.7=13.9)
A:
PF131661=AAA_13=PD(8.8=41.2),PF083176=Spc7=PD(19.6=94.1),PF082347=Spindle_Spc25=FE(44.0=100)
C2:
PF082347=Spindle_Spc25=PD(48.0=85.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAGAGGTTGAAAAGGCTGCA
R:
AGCTTTCCGAACATTGGCAAGA
Band lengths:
179-278
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)