RnoEX0085306 @ rn6
Exon Skipping
Gene
ENSRNOG00000006731 | Spc25
Description
SPC25, NDC80 kinetochore complex component [Source:RGD Symbol;Acc:1307811]
Coordinates
chr3:55438536-55444277:-
Coord C1 exon
chr3:55444173-55444277
Coord A exon
chr3:55441232-55441330
Coord C2 exon
chr3:55438536-55439164
Length
99 bp
Sequences
Splice sites
3' ss Seq
TTTGTAATCTCTGTCTTCAGGTG
3' ss Score
10.71
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
CCATTTCCACTGCTAACAAAGCCAATGAAGAGAGATTGAAACGGCTGCAGAAATCAGCGGATTTGTATAGAGATCGCCTTGGACTAGAAATTAGAAAGATTCCTG
Seq A exon
GTGATAAGCTGCAGTTTATATTTACTAGTATTGACCCTAAGAATCCTGAGAGCCCCTTCATGTTTTCCCTGAGCATAAATGAAGCTAAGGAATATGAAG
Seq C2 exon
TGTCCGACTGTTCACCTCATCTTGAGTGCCTAGCAGAATTTCAGGAGAAAGTCAGGAAGACCAACAATTTTTCAGCCTTCCTTGCCAATGTTCGGAAAGCTTTTATAGCTAAGGTTCATAATTGATAGGCTTATTCTTTGTTATTGTATATATCCTAAAGGGATTCTTACCTCTTGACCCTGTCATTCTTCACTACTTTTGTGTAGTATGAGAGAAACTAGAATACATCATCCCAAACTATGCCTCTTTGACATAACATTTGTGAGCTGAAAACAGTTAAGCAGCGGCATAGTCAGAAAAATTTTGCCCTCCCTCAGTCTGCCTAATCGTGGGACCTAGATTATAGAAAGACAGAAGTTAGTCGATTACCACTTCTGACAAAGGCACCAGAGGAATGGACACGTCTTTCTTCATTAATTTATTCCTGTAAATATATTCTCCATAATTCCCCATCTGTGGAAGTCAAAAGGCAAATCTGTCTTGTCATGTTGTAAAATGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006731-'11-7,'11-6,12-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.139 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF121283=DUF3584=PD(22.1=91.7),PF083176=Spc7=FE(17.2=100),PF082347=Spindle_Spc25=PU(6.7=13.9)
A:
PF083176=Spc7=FE(16.3=100),PF082347=Spindle_Spc25=FE(44.0=100)
C2:
PF083176=Spc7=PD(10.8=52.4),PF082347=Spindle_Spc25=PD(48.0=85.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGATTGAAACGGCTGCAGA
R:
TCCGAACATTGGCAAGGAAGG
Band lengths:
171-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]