GgaEX0016315 @ galGal3
Exon Skipping
Gene
ENSGALG00000010900 | SPC25
Description
NA
Coordinates
chr7:20396574-20398406:+
Coord C1 exon
chr7:20396574-20396678
Coord A exon
chr7:20397180-20397278
Coord C2 exon
chr7:20397993-20398406
Length
99 bp
Sequences
Splice sites
3' ss Seq
GAATTGTTTGTTTGCTTTAGATG
3' ss Score
7.94
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
TAATATCTTCTAAAAACAAAGCCACTAAGGAGAGAGTGGAACGACTGTGCAAGTCTAAAGAGTTGTTTGAAGAGCGGCTTGGATTGGAAATACGCAGAATTCATA
Seq A exon
ATGAGCAGTTACAGTTTATATTCAGACATATTGACCACAAAGATCCCGACAAGCCGTATATGTTTACCCTTTCCATAAATGAACAGGGAGATTATGAAG
Seq C2 exon
TGACTTCGTGTACTCCTCCTCTGGATTGTATATCAGAGTTCCAGCTGAAAGTGAGAGAAACTAACAATTTTTCTGCATTTATTGCCAACATCAGAAAAGCCTTCACTGCTTTATCTTTTAAACAGTCTACTTAAAATTAGCTTATAACTGCTTTCTAGCTATAAAGCACTTTTATTTTTCCTTCCTGTGCTGTGAAAGTATGTATTTATCCATGTCTTACTCTACTTCTCTAATTTCTAAATAAAGAAAAGTAATGAAAACAGTATTTTAGTCCACTGTTCTAAAGGGACATTTTAGGTCATTTTTGGAACATTATAATCAACTACTTCCTTAACTGAGTGTCTCCGGACTTGTAAATATGGATCCAGAAGCAAACAGCTAAGTTTTCATTTAAGGATTTCATTTAAGAGGCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010900-'5-7,'5-5,6-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.028 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083176=Spc7=FE(19.0=100),PF082347=Spindle_Spc25=PU(6.7=13.9)
A:
PF083176=Spc7=PD(15.8=85.3),PF082347=Spindle_Spc25=FE(44.0=100)
C2:
PF082347=Spindle_Spc25=PD(48.0=80.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTGGAACGACTGTGCAAGT
R:
GTGAAGGCTTTTCTGATGTTGGC
Band lengths:
178-277
Functional annotations
There are 0 annotated functions for this event