MmuEX6101846 @ mm10
Exon Skipping
Gene
ENSMUSG00000005233 | Spc25
Description
SPC25, NDC80 kinetochore complex component, homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:1913692]
Coordinates
chr2:69193895-69200089:-
Coord C1 exon
chr2:69199985-69200089
Coord A exon
chr2:69197135-69197233
Coord C2 exon
chr2:69193895-69194545
Length
99 bp
Sequences
Splice sites
3' ss Seq
TTTATAATCTCTTTCTTCAGGTA
3' ss Score
11.01
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
CCATTTCCACTGCTAACAAAGCTAATGAAGAGAGATTGAAAGGACTGCAGAAATCAGCGGATCTGTATAGAGATTACCTTGGACTAGAAATTAGAAAGATTCACG
Seq A exon
GTAATAAATTGCAGTTTATATTTACTAGTATTGACCCTAAGAATCCTGAGAGCCCATATATGTTTTCCATGAGCATAAATGAAGCTAAGGAATATGAAG
Seq C2 exon
TGTACGACAGTTCGCCTCATCTTGAGTGCCTAGCAGAATTTCAGGAGAAAGTCAGGAAGACCAACAATTTTTCAGCTTTTCTTGCCAATATTCGGAAGGCTTTTATAGCTAAGGTTCATAATTGATATAGGTTTGTTCTTTGTTACTGTATATATCCAGAGGAATTCTCATCTCTTGTCCCTGTCATTTTTCTCTCTTTCTGTGTGGTATTAAAGAAACTAGAATATATCATCCCAAACCATGCCTCTTTGAGGTAACATTTGTGAGCTGAAAACAGTTAAGCAGCAGCAGAGTTAGAAAACCTTTGCCTTCCCCCAGTCTACCTAAACATGGGACCTAGATGATAGAGGTATCTAGCTCTGTACCCACAAAGAAAGATAGAAGTTAGTCGCTTACCACAGCAGACGTGGCACCAGAGGAATTGACAAGCCTTGCTTCATTAATTTATTCCTGTAAATATATTCTTCACAATTCCCCATCTGTGGAAGTCAAAAGGCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000005233-'11-13,'11-10,17-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.306 A=0.040 C2=0.000
Domain overlap (PFAM):
C1:
PF083176=Spc7=FE(19.6=100),PF101864=Atg14=PD(17.5=66.7),PF082347=Spindle_Spc25=PU(11.6=13.9)
A:
PF083176=Spc7=PD(16.2=85.3),PF082347=Spindle_Spc25=FE(44.0=100)
C2:
PF082347=Spindle_Spc25=PD(48.0=85.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGACTGCAGAAATCAGCGG
R:
AGCCTTCCGAATATTGGCAAGA
Band lengths:
167-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types