MmuEX6101846 @ mm9

Exon Skipping

Gene

ENSMUSG00000005233 | Spc25

Description

SPC25, NDC80 kinetochore complex component, homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:1913692]

Coordinates

chr2:69031952-69038146:-

Coord C1 exon

chr2:69038042-69038146

Coord A exon

chr2:69035192-69035290

Coord C2 exon

chr2:69031952-69032602

Length

99 bp

Sequences

Splice sites

3' ss Seq

TTTATAATCTCTTTCTTCAGGTA

3' ss Score

11.01

5' ss Seq

AAGGTAAGT

5' ss Score

11

Exon sequences

Seq C1 exon

CCATTTCCACTGCTAACAAAGCTAATGAAGAGAGATTGAAAGGACTGCAGAAATCAGCGGATCTGTATAGAGATTACCTTGGACTAGAAATTAGAAAGATTCACG

Seq A exon

GTAATAAATTGCAGTTTATATTTACTAGTATTGACCCTAAGAATCCTGAGAGCCCATATATGTTTTCCATGAGCATAAATGAAGCTAAGGAATATGAAG

Seq C2 exon

TGTACGACAGTTCGCCTCATCTTGAGTGCCTAGCAGAATTTCAGGAGAAAGTCAGGAAGACCAACAATTTTTCAGCTTTTCTTGCCAATATTCGGAAGGCTTTTATAGCTAAGGTTCATAATTGATATAGGTTTGTTCTTTGTTACTGTATATATCCAGAGGAATTCTCATCTCTTGTCCCTGTCATTTTTCTCTCTTTCTGTGTGGTATTAAAGAAACTAGAATATATCATCCCAAACCATGCCTCTTTGAGGTAACATTTGTGAGCTGAAAACAGTTAAGCAGCAGCAGAGTTAGAAAACCTTTGCCTTCCCCCAGTCTACCTAAACATGGGACCTAGATGATAGAGGTATCTAGCTCTGTACCCACAAAGAAAGATAGAAGTTAGTCGCTTACCACAGCAGACGTGGCACCAGAGGAATTGACAAGCCTTGCTTCATTAATTTATTCCTGTAAATATATTCTTCACAATTCCCCATCTGTGGAAGTCAAAAGGCAAA

VastDB Features

Vast-tools module Information

Secondary ID

ENSMUSG00000005233-'7-10,'7-8,13-10=AN

Average complexity

A_S

Mappability confidence:

100%=100=100%

Protein Impact

Alternative protein isoforms (Ref)

No structure available

Features

Disorder rate (Iupred):

C1=0.300 A=0.015 C2=0.000

Domain overlap (PFAM):

C1:

PF083176=Spc7=FE(29.4=100),PF148171=HAUS5=PD(33.0=94.4),PF101864=Atg14=PD(26.6=69.4),PF061036=DUF948=PD(22.5=50.0),PF105454=MADF_DNA_bdg=PD(29.2=72.2),PF082347=Spindle_Spc25=PU(14.7=13.9)

A:

PF0149614=V_ATPase_I=FE(16.6=100),PF083176=Spc7=PD(16.2=85.3),PF082347=Spindle_Spc25=FE(44.0=100)

C2:

PF0149614=V_ATPase_I=PD(19.1=90.5),PF082347=Spindle_Spc25=PD(48.0=85.7)

Main Inclusion Isoform:

ENSMUSP00000005365