BtaEX6009325 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019137 | SCN7A
Description
sodium channel, voltage gated, type VII alpha subunit [Source:HGNC Symbol;Acc:HGNC:10594]
Coordinates
chr2:29985866-29988074:+
Coord C1 exon
chr2:29985866-29986144
Coord A exon
chr2:29987158-29987211
Coord C2 exon
chr2:29987937-29988074
Length
54 bp
Sequences
Splice sites
3' ss Seq
AATACATGCCATTTTTACAGGCA
3' ss Score
7.04
5' ss Seq
GATGTAAGT
5' ss Score
9.11
Exon sequences
Seq C1 exon
GTGGTAGTGAGAGCTTTGATTAAAACAACTTTACCCACATTGAATGTGTTTCTGGTCTGCCTTATGATCTGGCTGGCTTTTGGCATCATAGGAGTACACTTATTTGCTGGCAAATTCTATGAGTGCATTGACCCAACAAGTGGAGAAAGGTTTCCTCTATCTGAAGTCATGAACAGAAGTCAATGTGAAAGCCTTGTATTTAATGAATCCATGCCATGGGAGAATGCAAAACTAAATTTTGATAATGTTGGAATCAGTTTTCTTTCACTGCTTCAAGTA
Seq A exon
GCAACATTTAATGGATGGATCACTATTATGAATTCAGCAGTTGATTCTACTGAT
Seq C2 exon
GTAGATATGCAACCTAATTTTGAAAACAACATCTATATGTATTGTTACTTTATTGACTTTATTATCATTGGATTATTTCTTCCTCTGAGTATGTTGATTGGTGCTATTGTTGCCAATTTCCACAAGCATAAAATAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019137-'24-26,'24-25,25-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(41.3=100)
A:
PF0052026=Ion_trans=FE(7.6=100)
C2:
PF0052026=Ion_trans=PD(15.7=76.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAATCAGTTTTCTTTCACTGCT
R:
GGCAACAATAGCACCAATCAACA
Band lengths:
145-199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]