RnoEX0078593 @ rn6
Exon Skipping
Gene
ENSRNOG00000029342 | Scn7a
Description
sodium voltage-gated channel alpha subunit 7 [Source:RGD Symbol;Acc:61922]
Coordinates
chr3:52783221-52784884:-
Coord C1 exon
chr3:52784606-52784884
Coord A exon
chr3:52783731-52783784
Coord C2 exon
chr3:52783221-52783358
Length
54 bp
Sequences
Splice sites
3' ss Seq
GTATATTTTATTTTCAACAGGCA
3' ss Score
8.38
5' ss Seq
GGTGTGAGT
5' ss Score
6.05
Exon sequences
Seq C1 exon
GTGGTTCTGAGAGCTTTGATAAAAACAACCTTACCCGCTGTGAGCGTGTTTCTGGTCTGCCTAATGATCTGGCTGCTTTTCAGTGTTATGGGAGTGTTCTTATTCGCTGGCAAGTTCTATGAATGCATTGACCCAACAAGGGGAGAAAGATTCTCTGTATTTGAAGTTATGAATAAGAGTCAGTGTGAAAACCTGGTATTTAATGAATCAATGCCATGGGAGAATGCAAAACTGAACTTTGATAATGTTGGAAATGGTTTTCTTTCTTTGTTCCAAGTG
Seq A exon
GCAACATTTAATGGGTGGATCAGTATTATGAATTCAGCAATTGACTCTGTTGGT
Seq C2 exon
GTGTACATGCAGCCTAGTTTTGAGCACAGCCTCCACATGTACACTTACTTTATCATCTTTGTTGTGTTTGGATTATTTCTTCCCTTGTGTATGCTGATTGGTGTTATTATCAGGAATTTCAACAAGCAGAAAATTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029342-'32-39,'32-38,33-39
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(41.3=100)
A:
PF0052026=Ion_trans=FE(7.6=100)
C2:
PF0052026=Ion_trans=PD(15.7=76.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGTCAGTGTGAAAACCTGGT
R:
GTACATGTGGAGGCTGTGCTC
Band lengths:
146-200
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]