BtaEX6009418 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000038180 | SCN2A
Description
sodium channel, voltage gated, type II alpha subunit [Source:HGNC Symbol;Acc:HGNC:10588]
Coordinates
chr2:30997623-31002672:-
Coord C1 exon
chr2:31002518-31002672
Coord A exon
chr2:31001192-31001365
Coord C2 exon
chr2:30997623-30997745
Length
174 bp
Sequences
Splice sites
3' ss Seq
TGGAGTTTTTTCACTTACAGGCC
3' ss Score
8.54
5' ss Seq
GATGTGAGT
5' ss Score
7.77
Exon sequences
Seq C1 exon
ACTGTGTGCGGAAGTTTAAGTGTTGTCAGATAAGCATAGAAGAAGGCAAAGGGAAACTCTGGTGGAACTTGAGAAAAACTTGCTATAAGATAGTGGAGCATAACTGGTTTGAAACCTTCATTGTCTTCATGATTCTGGTCAGCAGTGGGGCACTG
Seq A exon
GCCTTTGAAGATATATATATTGAACAGCGAAAAACCATTAAGACCATGTTAGAATATGCTGACAAAGTTTTCACTTATATATTCATCCTGGAAATGCTTCTCAAGTGGGTTGCATATGGCTTTCAAGTGTATTTTACCAATGCCTGGTGCTGGTTAGATTTCCTGATCGTCGAT
Seq C2 exon
GTCTCATTGGTTAGCTTAACTGCAAATGCTTTGGGATACTCAGAACTTGGTGCCATCAAATCCCTCAGAACACTAAGAGCTCTGAGGCCGCTGAGAGCCTTATCCCGGTTTGAAGGAATGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038180-'23-22,'23-21,24-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF065128=Na_trans_assoc=PD(19.8=84.6)
A:
PF0052026=Ion_trans=PU(17.0=67.2)
C2:
PF0052026=Ion_trans=FE(17.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGTGTGCGGAAGTTTAAGTGT
R:
CGGCCTCAGAGCTCTTAGTGT
Band lengths:
245-419
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]