GgaEX1051159 @ galGal4
Exon Skipping
Gene
ENSGALG00000011009 | SCN2A
Description
sodium channel, voltage gated, type II alpha subunit [Source:HGNC Symbol;Acc:HGNC:10588]
Coordinates
chr7:19331147-19334678:-
Coord C1 exon
chr7:19334524-19334678
Coord A exon
chr7:19333352-19333525
Coord C2 exon
chr7:19331147-19331269
Length
174 bp
Sequences
Splice sites
3' ss Seq
CTCAAAAATCTTTTTCACAGGCA
3' ss Score
6.54
5' ss Seq
GATGTATGT
5' ss Score
6.31
Exon sequences
Seq C1 exon
GCTGTGTGCGGAGATTCAAGTGCTGTCAAGTCAGTGTAGAAGATGGGAAAGGGAAAATCTGGTGGAATCTTAGGAAAACGTGCTATAAGATTGTTGAACACAACTGGTTTGAGACCTTCATTGTCTTCATGATTCTCCTCAGCAGTGGGGCTCTG
Seq A exon
GCATTTGAAGATATATACATAGAGCAACGTAAAACTATCAAGACCATGCTGGAATATGCTGACAAAGTTTTTACTTACATCTTCATTCTGGAAATGCTTTTAAAATGGGTGGCTTATGGCTTTCAAACATATTTCACTAATGCATGGTGCTGGCTGGACTTCCTGATTGTTGAT
Seq C2 exon
GTCTCTTTGGTTAGCTTAACAGCTAATGCCTTGGGCTACTCAGAACTTGGTGCGATTAAATCCCTTAGGACACTAAGAGCTTTGAGACCTCTAAGAGCCTTGTCGCGATTTGAAGGGATGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011009-'23-24,'23-21,24-24
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF065128=Na_trans_assoc=PD(19.8=84.6)
A:
PF0052026=Ion_trans=PU(17.0=67.2)
C2:
PF0052026=Ion_trans=FE(17.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCGGAGATTCAAGTGCTGTCA
R:
GCGACAAGGCTCTTAGAGGTC
Band lengths:
254-428
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]