BtaEX6009435 @ bosTau6
Exon Skipping
Description
NA
Coordinates
chr2:31647622-31654537:+
Coord C1 exon
chr2:31647622-31647850
Coord A exon
chr2:31654092-31654189
Coord C2 exon
chr2:31654301-31654537
Length
98 bp
Sequences
Splice sites
3' ss Seq
GTGCTTTTTTTCTGTTTTAGAGT
3' ss Score
12.17
5' ss Seq
CAAGTACGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
AAAACTGTGAGAGTAGTGATCAATTTTAAGAAAACGCAGAAGACAATAGTAAGAGTTAGCCCACATGCACCTCTTCAAGAACTTATCGCCATTATATGCAGCAAATGTGAGTTTGATCCATTACACACACAGTTATTGAAGGACTATCAGTCTCAGGAGCCCCTTGACTTGACAAAATCTCTTAATGAACTGGGACTGAGGGAATTATATGCCATCGATGTCAGCAAAG
Seq A exon
AGTCCTGCCAAATATCACAAAACCTAGACCTTATGAAGGATAAAGAAAGTAAAGGGTTTTTCAGCTTATTTCAACGCAGTAAGAAAAAGCGGGAGCAA
Seq C2 exon
ACTGTCAGCGCCCCCGCGACTCCTCTAGTAAGCAAGCACCGGCCAACTTTTACAAAGAGCAATACCATTTCCAAACAGTATATTTCAAACACCCTGCCGTCGGATGCCCCCAAGAAGAGGCGTGCTCCACTGCCCCCAATGCCAGGGTCTCAGAGTTCCCCCCAAGACCCCGCGCACATCCAGGAGAGGCCAGCTTCTTGTATGGTGAAATCCCTGAGTGTGGATGAAACAGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005501-'10-8,'10-6,13-8=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.106 C2=0.975
Domain overlap (PFAM):
C1:
PF094695=Cobl=PU(59.5=61.0)
A:
PF094695=Cobl=PD(39.2=93.9)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGCCCCTTGACTTGACAA
R:
CGACGGCAGGGTGTTTGAAAT
Band lengths:
177-275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]