GgaEX6042544 @ galGal4
Exon Skipping
Gene
ENSGALG00000011068 | COBLL1
Description
cordon-bleu WH2 repeat protein-like 1 [Source:HGNC Symbol;Acc:HGNC:23571]
Coordinates
chr7:19593945-19595309:+
Coord C1 exon
chr7:19593945-19593983
Coord A exon
chr7:19594854-19594951
Coord C2 exon
chr7:19595076-19595309
Length
98 bp
Sequences
Splice sites
3' ss Seq
ACTCTTGTCTCCCCTTTTAGATT
3' ss Score
12.06
5' ss Seq
CAAGTAAGA
5' ss Score
7.61
Exon sequences
Seq C1 exon
CCACGTCACCGGTTGACTTAAACTTGCCATCTTTGAAAG
Seq A exon
ATTCCTGTCGTGTGTCTGAAAACTCAGATGTTCTAAAAGAGAAAGAAAACAAAGGGTTTTTCAGCTTTTTTCAACGAAGCAAGAAAAAGAGAGAGCAA
Seq C2 exon
ACTGCCAGTGCCCCAGCAACTCCATTAATGAGCAAGCCAAGGCCAATGTTTACCACAAGATCTGGCACGGGTAGCAAGCAGTATGATTCTAATACTCTGCCATCTGAAATGCCGAAAAAACGGAGAGCTCCTCTACCACCTATGCCAAATTCTCAGAGTGCCCCCCAGGAACTTGCAGAAGTCAAGACAGAATCTGATACTGTGAAATCTAACAGCCTTGATAGGAATGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011068-'17-15,'17-14,18-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.429 A=0.273 C2=1.000
Domain overlap (PFAM):
C1:
PF094695=Cobl=FE(14.1=100)
A:
PF094695=Cobl=PD(33.7=93.9)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCGGTTGACTTAAACTTGCCA
R:
TGGCATAGGTGGTAGAGGAGC
Band lengths:
179-277
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]