RnoEX6017098 @ rn6
Exon Skipping
Gene
ENSRNOG00000027016 | Cobll1
Description
cordon-bleu WH2 repeat protein-like 1 [Source:RGD Symbol;Acc:1308954]
Coordinates
chr3:51187491-51194637:-
Coord C1 exon
chr3:51194599-51194637
Coord A exon
chr3:51187821-51187918
Coord C2 exon
chr3:51187491-51187715
Length
98 bp
Sequences
Splice sites
3' ss Seq
GTTTCTTCGTGTTTTTTCAGAGT
3' ss Score
10.04
5' ss Seq
CAAGTAAGG
5' ss Score
7.66
Exon sequences
Seq C1 exon
CCCCCTCTGTTACTGCCTTCAGTAAGTCATCTTTCCAAG
Seq A exon
AGTCCTGCCAAATATCACATAACCCGGACATTGTGAAGGAGAAAGAAAACAAAGGGATTTTCAGCTTTTTCCAACGCAGTAAGAAAAAGCGAGAGCAA
Seq C2 exon
ACTGCCAGCGCTCCTGCGACCCCACTAGTGAGCAAGCACCGTCCTTCTTTTACGAGGTCCAACACCATTTCCAAACCCTACATTTCCAACACGCTGCCCTCTGATGCACCCAAGAAGAGGCGTGCCCCGCTGCCACCCATGCCCACATCCCAGGGTGCTGCTCAAGGCCAGGAGAGGCGCGCTTCTTGTGTGGAGAGATCCACCAGTGTGGACGACACGGATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027016-'19-8,'19-7,20-8=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.333 C2=0.987
Domain overlap (PFAM):
C1:
PF094695=Cobl=FE(14.1=100)
A:
PF094695=Cobl=PD(33.7=93.9)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCCTCTGTTACTGCCTTCA
R:
GGGGCACGCCTCTTCTTG
Band lengths:
167-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]