DreEX6038659 @ danRer10
Exon Skipping
Gene
ENSDARG00000102829 | COBLL1 (2 of 2)
Description
cordon-bleu WH2 repeat protein-like 1 [Source:HGNC Symbol;Acc:HGNC:23571]
Coordinates
chr9:50469851-50473778:+
Coord C1 exon
chr9:50469851-50469910
Coord A exon
chr9:50473146-50473243
Coord C2 exon
chr9:50473557-50473778
Length
98 bp
Sequences
Splice sites
3' ss Seq
TAATCTGCATTGAATCCCAGAAA
3' ss Score
3.03
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
TTATTAGTCCTGTAAGTCCTATCAGTCCAGTCAGTCTTCCTCCATCTCCAACTCGCTCAG
Seq A exon
AAATATTTTATCACGGGAAAGAAAAATCCTTGCGGGAGAAGGATAACAAAAGGCGCTTCAGTCTGTTTCGCAGAGGAAGCAAGAAGCAATCCGAACAG
Seq C2 exon
TCTATGACCGTGAGCGCTCCGGCTTCTCCAGTGCACAGAAAGCAGCGGCCGGTCAGTATGAGCTCCTTCAGCACGCATGTACCCCTCAGCTACGACTGCAACACGATGCCCTCCGACACGCCGAAAAAACGACGAGCGCCGCTGCCGCCTAGCATGATGTCACAGAGCATGCCCAGCGACCTCAGTCAAACACAGACCACTGTGCATCCTGATGGCAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000102829-'10-10,'10-9,11-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.732 A=0.879 C2=0.981
Domain overlap (PFAM):
C1:
PF094695=Cobl=FE(19.4=100)
A:
PF094695=Cobl=PD(31.6=93.9)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCCATCTCCAACTCGCTCA
R:
GACATCATGCTAGGCGGCAG
Band lengths:
183-281
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]