GgaEX6042544 @ galGal3
Exon Skipping
Gene
ENSGALG00000011068 | COBLL1
Description
NA
Coordinates
chr7:21571048-21574000:+
Coord C1 exon
chr7:21571048-21571276
Coord A exon
chr7:21573545-21573642
Coord C2 exon
chr7:21573755-21574000
Length
98 bp
Sequences
Splice sites
3' ss Seq
ACTCTTGTCTCCCCTTTTAGATT
3' ss Score
12.06
5' ss Seq
CAAGTAAGA
5' ss Score
7.61
Exon sequences
Seq C1 exon
CAAACAGTAAGGGTAGTGATAAACTACAAGAAGACACAGAAGACAGTAGTAAGAGTTAGTCCATATTCACCGCTTCAGGAACTCATACCAATTATCTGTAGTAAATGTGAATTTGATCCTTCACACACTGTGTTACTGAAGAATTACCAGTCTCAAGAAGCCCTTGATGTGACAAAATCTCTTAATGATCTTGGACTAAGAGAATTATATGCCATGGATATCAGTCGAG
Seq A exon
ATTCCTGTCGTGTGTCTGAAAACTCAGATGTTCTAAAAGAGAAAGAAAACAAAGGGTTTTTCAGCTTTTTTCAACGAAGCAAGAAAAAGAGAGAGCAA
Seq C2 exon
CCAAATCCCAAGACTGCCAGTGCCCCAGCAACTCCATTAATGAGCAAGCCAAGGCCAATGTTTACCACAAGATCTGGCACGGGTAGCAAGCAGTATGATTCTAATACTCTGCCATCTGAAATGCCGAAAAAACGGAGAGCTCCTCTACCACCTATGCCAAATTCTCAGAGTGCCCCCCAGGAACTTGCAGAAGTCAAGACAGAATCTGATACTGTGAAATCTAACAGCCTTGATAGGAATGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011068-'2-7,'2-6,4-7=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.515 C2=1.000
Domain overlap (PFAM):
C1:
PF094695=Cobl=PU(59.5=61.0)
A:
PF094695=Cobl=PD(39.2=93.9)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGCTTCAGGAACTCATACCA
R:
GCACTGGCAGTCTTGGGATTT
Band lengths:
183-281
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]