DreEX6020637 @ danRer10
Exon Skipping
Gene
ENSDARG00000089858 | COBLL1 (1 of 2)
Description
cordon-bleu WH2 repeat protein-like 1 [Source:HGNC Symbol;Acc:HGNC:23571]
Coordinates
chr6:10116384-10117148:+
Coord C1 exon
chr6:10116384-10116428
Coord A exon
chr6:10116530-10116636
Coord C2 exon
chr6:10116939-10117148
Length
107 bp
Sequences
Splice sites
3' ss Seq
GATCTTGTCTTTGTGCACAGGTG
3' ss Score
9.54
5' ss Seq
CAGGTTTGT
5' ss Score
7.44
Exon sequences
Seq C1 exon
TGGTTTCAGCAGATCCTCCTTCTGATCCTGTATCAACTAATAAAG
Seq A exon
GTGCCGATGAAGAGCAGAAAACCCCTGTTAAAGAAAAGAACCACAGAGAGAAGGCAAACAAAGGATTCTTTGGCTTATTCATAAAGAGCAAGAAAACATCTGAGCAG
Seq C2 exon
GCTGTGGATGACAGCGCTCCAGCATCCCCTGAGCTGAACGGTCAGTGTACGGACAGGGTGAATGGTTTTAATGACCACTTTTTACCCACAATCCCTGCTGACATGTCAAAGAAGAGACGTGCTCCTCTGCCTCCTATGGTGGCGTCTCAGAGTGTCGCCTGTGACCTTCAGATTAAAGATTTTCCAGAGTCAGATCCTGCTGGAAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000089858-'8-12,'8-11,9-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.500 C2=1.000
Domain overlap (PFAM):
C1:
PF094695=Cobl=FE(15.6=100)
A:
PF094695=Cobl=PD(35.4=94.4)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAGATCCTCCTTCTGATCCT
R:
TCCAGCAGGATCTGACTCTGG
Band lengths:
242-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]