MmuEX6101666 @ mm10
Exon Skipping
Gene
ENSMUSG00000034903 | Cobll1
Description
Cobl-like 1 [Source:MGI Symbol;Acc:MGI:2442894]
Coordinates
chr2:65125893-65133807:-
Coord C1 exon
chr2:65133579-65133807
Coord A exon
chr2:65126208-65126305
Coord C2 exon
chr2:65125893-65126117
Length
98 bp
Sequences
Splice sites
3' ss Seq
TGTTTTTCATGTTTTTTCAGAGT
3' ss Score
10.48
5' ss Seq
CAAGTAGGC
5' ss Score
5.3
Exon sequences
Seq C1 exon
AAAACTGTGAGAGTAGTGATCAACTTTAAGAAAACACAGAAGACCATAGTGAGAGTTAGTCCCCACGCACCCCTTCAAGATCTTGCTCCCATCATATGCAGTAAATGTGAGTTTGATCCGTTGCATACCGTGCTGTTGAAGGATTACCAGGCTCAGGAGCCCCTCGACTTGACAAAATCTCTTAATGACTTGGGACTAAGAGAGTTATATGCCATGGATATCAGCAGAG
Seq A exon
AGTCCTGCCAAATATCACACAACCCGGACATTGTGAAGGAGAAAGAAAACAAAGGGATTTTCAGTTTTTTCCAACGCAGCAAGAAAAAGCGAGAGCAA
Seq C2 exon
ACTGCCAGTGCTCCTGCGACCCCACTAGTGAGCAAGCATCGTCCATCTTTCACGAGGTCCAACACCATTTCCAAACCGTACATTTCCAATACCCTGCCCTCGGATGCACCCAAGAAGAGACGTGCCCCACTGCCACCGATGCCCACATCCCAGGGTGCTGCTCAAGGCCAGGAGAGACGAGCGTCTTGTGTGGAGAGATCCACCAGTGTGGACGACACAGATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034903-'33-20,'33-19,35-20=AN
Average complexity
A_C1
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.329 C2=0.985
Domain overlap (PFAM):
C1:
PF094695=Cobl=PU(59.5=61.0)
A:
PF094695=Cobl=PD(39.2=93.9)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCCCCTCGACTTGACAAAA
R:
CGAGGGCAGGGTATTGGAAAT
Band lengths:
175-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types