BtaEX6009516 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015317 | SLC4A10
Description
sodium-driven chloride bicarbonate exchanger [Source:RefSeq peptide;Acc:NP_001033217]
Coordinates
chr2:34692686-34705501:-
Coord C1 exon
chr2:34705412-34705501
Coord A exon
chr2:34697207-34697364
Coord C2 exon
chr2:34692686-34692773
Length
158 bp
Sequences
Splice sites
3' ss Seq
TTACTTTGTGATGCTCTCAGGTC
3' ss Score
8.27
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
GGGCTGGGAGGCCAACAAAAGGGGCATACTAGCCCATGTGGGATGAAACAAAGACATGAGAAAGGACCTCCACACCAGCAAGACAGAGAG
Seq A exon
GTCGATCTGCATTTTATGAAGAAGATTCCTCCAGGTGCTGAAGCCTCCAACATCTTAGTTGGAGAATTAGAGTTTTTGGATCGAACTGTAGTTGCATTTGTCAGGCTGTCCCCAGCTGTACTGCTTCAAGGATTAGCTGAGGTCCCAATCCCAACCAG
Seq C2 exon
ATTTTTGTTCATTCTTCTGGGACCCCTGGGAAAGGGTCAACAGTACCATGAGATTGGCAGATCAATTGCAACCCTAATGACAGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015317-'8-11,'8-10,9-11=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.132 C2=0.000
Domain overlap (PFAM):
C1:
PF075658=Band_3_cyto=FE(10.0=100)
A:
PF075658=Band_3_cyto=FE(17.9=100)
C2:
PF075658=Band_3_cyto=FE(10.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGGAGGCCAACAAAAGGG
R:
CTCATCTGTCATTAGGGTTGCA
Band lengths:
175-333
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]