DreEX6038703 @ danRer10
Exon Skipping
Gene
ENSDARG00000060303 | slc4a10b
Description
solute carrier family 4, sodium bicarbonate transporter, member 10b [Source:ZFIN;Acc:ZDB-GENE-081105-62]
Coordinates
chr9:51809199-51814034:-
Coord C1 exon
chr9:51813946-51814034
Coord A exon
chr9:51811112-51811269
Coord C2 exon
chr9:51809199-51809286
Length
158 bp
Sequences
Splice sites
3' ss Seq
GCGTCATTGTGTTTTTACAGATA
3' ss Score
9.44
5' ss Seq
CAGGTGAAC
5' ss Score
5.56
Exon sequences
Seq C1 exon
GTCAGACGATTTCACCTCAGACTCAGCCAATGAACATTGAAGTCAAGCACGACGTGAGTCGGGAAAACAGTACTGTGGATTTCAGCAAG
Seq A exon
ATAGACCTGCACTTCATGAAGAAGATTCCTCCAGGAGCAGAGGCCTCTAATGTCCTGGTGGGAGAGCTGGAGTTTCTGGACCGGCCTGTGGTGGCGTTTGTCCGTCTCTCTCCTGCTGTGCTGCTCAATGGACTGGCAGAGGTGCCCATTACCACCAG
Seq C2 exon
GTTTCTGTTCATCCTTCTCGGACCTCTGGGAAAAGGAGCTCAGTATCACGAGATTGGCAGATCCATCGCAACCTTGATGACAGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000060303-'5-6,'5-5,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.533 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF075658=Band_3_cyto=FE(11.2=100)
A:
PF075658=Band_3_cyto=FE(20.1=100)
C2:
PF075658=Band_3_cyto=FE(11.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CGATTTCACCTCAGACTCAGCC
R:
TCATCTGTCATCAAGGTTGCGA
Band lengths:
170-328
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]