HsaEX6016237 @ hg19
Exon Skipping
Gene
ENSG00000144290 | SLC4A10
Description
solute carrier family 4, sodium bicarbonate transporter, member 10 [Source:HGNC Symbol;Acc:13811]
Coordinates
chr2:162730426-162738954:+
Coord C1 exon
chr2:162730426-162730515
Coord A exon
chr2:162735641-162735798
Coord C2 exon
chr2:162738867-162738954
Length
158 bp
Sequences
Splice sites
3' ss Seq
TTACCTGGTGATGCTTGCAGGTT
3' ss Score
7.17
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
GGACTGGGAGGCCAACAAAAGGGGCATACTAGTCCATGTGGGATGAAACAAAGGCATGAAAAAGGACCTCCACACCAGCAAGAGAGAGAG
Seq A exon
GTTGATCTGCATTTTATGAAAAAGATTCCTCCAGGTGCTGAAGCATCGAACATCTTAGTGGGAGAACTGGAGTTCTTGGATCGAACAGTAGTTGCGTTTGTCAGGTTGTCTCCAGCTGTATTGCTTCAAGGACTGGCTGAAGTCCCAATCCCAACCAG
Seq C2 exon
ATTTTTGTTCATTCTTCTGGGACCCCTGGGAAAGGGTCAACAGTACCATGAGATTGGCAGATCAATTGCAACCCTAATGACAGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000144290-'16-23,'16-22,17-23=AN
Average complexity
A_C2
Mappability confidence:
88%=75=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.066 C2=0.000
Domain overlap (PFAM):
C1:
PF075658=Band_3_cyto=FE(10.0=100)
A:
PF075658=Band_3_cyto=FE(20.0=100)
C2:
PF075658=Band_3_cyto=FE(11.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GACTGGGAGGCCAACAAAAGG
R:
CTCATCTGTCATTAGGGTTGCA
Band lengths:
177-335
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)