MmuEX6101586 @ mm10
Exon Skipping
Gene
ENSMUSG00000026904 | Slc4a10
Description
solute carrier family 4, sodium bicarbonate cotransporter-like, member 10 [Source:MGI Symbol;Acc:MGI:2150150]
Coordinates
chr2:62243362-62253398:+
Coord C1 exon
chr2:62243362-62243453
Coord A exon
chr2:62250379-62250536
Coord C2 exon
chr2:62253311-62253398
Length
158 bp
Sequences
Splice sites
3' ss Seq
TTCACTTGTGATGCTCTCAGGTT
3' ss Score
7.41
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
CAGGTCAGGTTGTTTCTCCTCAGTCTGCTCCAGCCTGTGCTGAGAATAAAAATGATGTCAGCAGGGAAAACAGCACTGTAGACTTCAGCAAG
Seq A exon
GTTGATCTGCATTTTATGAAAAAGATTCCTCCGGGTGCTGAAGCTTCAAACATCTTGGTAGGAGAACTGGAGTTCCTAGACAGAACTGTGGTTGCCTTTGTCAGGTTGTCTCCAGCTGTCTTGCTCCAAGGACTTGCTGAAGTTCCAATCCCAAGCAG
Seq C2 exon
ATTTCTGTTCATCCTTCTGGGACCCCTGGGAAAGGGTCAACAGTACCACGAGATTGGCAGATCGATTGCGACCTTAATGACTGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026904-'15-28,'15-27,17-28
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.757 A=0.053 C2=0.000
Domain overlap (PFAM):
C1:
PF075658=Band_3_cyto=FE(11.5=100)
A:
PF075658=Band_3_cyto=FE(20.0=100)
C2:
PF075658=Band_3_cyto=FE(11.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGTCAGGTTGTTTCTCCTCA
R:
CATCAGTCATTAAGGTCGCAATCG
Band lengths:
178-336
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types