GgaEX0016677 @ galGal4
Exon Skipping
Gene
ENSGALG00000011120 | SLC4A10
Description
solute carrier family 4, sodium bicarbonate transporter, member 10 [Source:HGNC Symbol;Acc:HGNC:13811]
Coordinates
chr7:20715500-20722060:-
Coord C1 exon
chr7:20721969-20722060
Coord A exon
chr7:20717374-20717531
Coord C2 exon
chr7:20715500-20715587
Length
158 bp
Sequences
Splice sites
3' ss Seq
ATTTGATATCATTTTCCCAGGTT
3' ss Score
6.71
5' ss Seq
TAGGTACAG
5' ss Score
4.67
Exon sequences
Seq C1 exon
CAGGTCAGATTGTTTCCCCACAATCTGCTCCAGCCTGTGCTGAGAACAAAAATGATGTGAGCAGAGAAAATAGCACGGTTGACTTTAGCAAG
Seq A exon
GTTGACTTACACTTCATGAAAAAGATACCACCTGGAGCTGAAGCATCCAACATCTTAGTTGGTGAGCTGGAATTCCTGGACCGTGCAGTTGTTGCTTTTGTTAGGTTATCACCTGCGGTGCTGCTTACAGGACTAGCTGAAGTTCCAATTCCAACTAG
Seq C2 exon
ATTTTTGTTTATTCTTCTTGGGCCATTGGGTAAAGGACAACAATATCATGAGATTGGAAGATCAATTGCAACGCTGATGACAGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011120_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.677 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF075658=Band_3_cyto=FE(11.5=100)
A:
PF075658=Band_3_cyto=FE(20.0=100)
C2:
PF075658=Band_3_cyto=FE(11.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGTCAGATTGTTTCCCCACA
R:
TCATCTGTCATCAGCGTTGCA
Band lengths:
179-337
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]