RnoEX0082775 @ rn6
Exon Skipping
Gene
ENSRNOG00000005307 | Slc4a10
Description
solute carrier family 4 member 10 [Source:RGD Symbol;Acc:631407]
Coordinates
chr3:48199895-48208035:+
Coord C1 exon
chr3:48199895-48199984
Coord A exon
chr3:48204874-48205031
Coord C2 exon
chr3:48207948-48208035
Length
158 bp
Sequences
Splice sites
3' ss Seq
TTTACTTGTGATGCTCTCAGGTT
3' ss Score
7.69
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
GGACTGGGAGGCCAGCAAAAAGGGCATACTAGTCCATGTGGGATGAAACAAAGGCTTGACAAAGGACCACCACACCAGCAGGAGAGAGAG
Seq A exon
GTTGATCTTCATTTTATGAAAAAGATTCCTCCGGGTGCTGAGGCTTCAAACATCTTGGTAGGAGAACTGGAGTTTCTAGACAGAACTGTGGTTGCTTTTGTCAGGTTGTCTCCAGCCGTCTTGCTCCAAGGACTGGCTGAAGTTCCAATCCCAAGCAG
Seq C2 exon
ATTTCTGTTTATCCTTCTGGGACCACTGGGAAAGGGTCAACAGTACCATGAGATTGGCAGATCGATTGCAACCTTAATGACTGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005307-'16-23,'16-22,17-23
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.117 C2=0.000
Domain overlap (PFAM):
C1:
PF075658=Band_3_cyto=FE(10.0=100)
A:
PF075658=Band_3_cyto=FE(18.0=100)
C2:
PF075658=Band_3_cyto=FE(10.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GACTGGGAGGCCAGCAAAAAG
R:
GTCATTAAGGTTGCAATCGATCTGC
Band lengths:
170-328
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]