HsaEX6016237 @ hg38
Exon Skipping
Gene
ENSG00000144290 | SLC4A10
Description
solute carrier family 4 member 10 [Source:HGNC Symbol;Acc:HGNC:13811]
Coordinates
chr2:161872293-161882444:+
Coord C1 exon
chr2:161872293-161872384
Coord A exon
chr2:161879131-161879288
Coord C2 exon
chr2:161882357-161882444
Length
158 bp
Sequences
Splice sites
3' ss Seq
TTACCTGGTGATGCTTGCAGGTT
3' ss Score
7.17
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
CAGGTCAGGTTGTTTCTCCTCAGTCTGCTCCAGCCTGTGTTGAAAATAAAAATGATGTTAGCAGAGAAAACAGCACTGTTGACTTTAGCAAG
Seq A exon
GTTGATCTGCATTTTATGAAAAAGATTCCTCCAGGTGCTGAAGCATCGAACATCTTAGTGGGAGAACTGGAGTTCTTGGATCGAACAGTAGTTGCGTTTGTCAGGTTGTCTCCAGCTGTATTGCTTCAAGGACTGGCTGAAGTCCCAATCCCAACCAG
Seq C2 exon
ATTTTTGTTCATTCTTCTGGGACCCCTGGGAAAGGGTCAACAGTACCATGAGATTGGCAGATCAATTGCAACCCTAATGACAGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000144290-'35-45,'35-43,38-45
Average complexity
C1
Mappability confidence:
91%=83=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.694 A=0.026 C2=0.000
Domain overlap (PFAM):
C1:
PF075658=Band_3_cyto=FE(11.5=100)
A:
PF075658=Band_3_cyto=FE(20.0=100)
C2:
PF075658=Band_3_cyto=FE(11.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGTCAGGTTGTTTCTCCTCA
R:
CTCATCTGTCATTAGGGTTGCA
Band lengths:
180-338
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains