BtaEX6009536 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021691 | PSMD14
Description
Bos taurus proteasome (prosome, macropain) 26S subunit, non-ATPase, 14 (PSMD14), mRNA. [Source:RefSeq mRNA;Acc:NM_001076067]
Coordinates
chr2:35121838-35178193:-
Coord C1 exon
chr2:35178057-35178193
Coord A exon
chr2:35175737-35175788
Coord C2 exon
chr2:35121838-35121909
Length
52 bp
Sequences
Splice sites
3' ss Seq
TCTTTGTTTCTGTTTTCTAGAAA
3' ss Score
10.42
5' ss Seq
CAGGTTAGT
5' ss Score
8.02
Exon sequences
Seq C1 exon
GAGAGAGAGAGGGGGAAAAACAAAGCCTTGGGAAAAATTATACCTGCCAGTATTAACAAGAGAATTCTTGAATTAAGAAATTTTTCAAACTCAGCAAATTGAAGCTTAACACCACAAGAGCTGTAGCTACTGACCAG
Seq A exon
AAATATGGACAGACTTCTTAGACTTGGAGGAGGTATGCCTGGACTGGGCCAG
Seq C2 exon
GGGCCACCTACAGATGCTCCTGCAGTGGACACAGCAGAACAAGTCTATATCTCTTCCCTGGCACTGTTAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021691-'2-5,'2-1,3-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.188 C2=0.292
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0139816=JAB=PU(12.3=58.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGAAAAACAAAGCCTTGGG
R:
AGGAGCATCTGTAGGTGGCC
Band lengths:
147-199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]