DreEX0058980 @ danRer10
Exon Skipping
Gene
ENSDARG00000063100 | psmd14
Description
proteasome (prosome, macropain) 26S subunit, non-ATPase, 14 [Source:ZFIN;Acc:ZDB-GENE-070410-56]
Coordinates
chr11:10861855-10867244:-
Coord C1 exon
chr11:10867127-10867244
Coord A exon
chr11:10866503-10866559
Coord C2 exon
chr11:10861855-10861926
Length
57 bp
Sequences
Splice sites
3' ss Seq
TTTTCTTTATTTATGTCTAGATA
3' ss Score
7.35
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
TCCGTCCTGTATATCCCTGTTGTGGTGCGTTTCACGTTGGTAATTCTGGCTGATTCATTGTAGACGAGCTGAAACTCAGCTGCCACTCTCACATTTTCTCTTTCTTATTGAACAACAG
Seq A exon
ATATAAGGAATGGACCGGCTCTTGAGGCTTGGAGGGGGAATGCCGGGACTCAGCCAG
Seq C2 exon
GGTCCTCCCACAGATGCTCCCGCTGTGGACACGGCTGAACAGGTGTACATCTCCTCCCTCGCTCTGCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000063100-'1-1,'1-0,3-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.375 C2=0.292
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0139816=JAB=PU(12.3=58.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTGCGTTTCACGTTGGTAA
R:
GTACACCTGTTCAGCCGTGTC
Band lengths:
144-201
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]