GgaEX1046675 @ galGal4
Exon Skipping
Gene
ENSGALG00000011128 | PSMD14
Description
26S proteasome non-ATPase regulatory subunit 14 [Source:RefSeq peptide;Acc:NP_001026427]
Coordinates
chr7:20899887-20921590:-
Coord C1 exon
chr7:20921466-20921590
Coord A exon
chr7:20913529-20913580
Coord C2 exon
chr7:20899887-20899958
Length
52 bp
Sequences
Splice sites
3' ss Seq
CTTTGTTTCTGTTTCTCTAGAAA
3' ss Score
9.62
5' ss Seq
CAGGTTAGT
5' ss Score
8.02
Exon sequences
Seq C1 exon
CACCGCGCGCCCTCTGAACCAGGAAGCACACGCAGGGGCCTGGGCGGACCGGCTTTGAATGAGATCCGGCTGATTCACGGCGGCCTGGGTTGAGGCGGCGTGGTCGGAGCGGGCTCCGGACGGAG
Seq A exon
AAATATGGATAGACTTCTGCGACTTGGAGGAGGTATGCCTGGCCTGGGACAG
Seq C2 exon
GGGCCACCAACAGATGCTCCTGCGGTCGACACAGCGGAACAGGTTTATATCTCATCCCTGGCACTGCTGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011128_MULTIEX1-2/6=C1-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.375 C2=0.292
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0139816=JAB=PU(12.3=58.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTTTGAATGAGATCCGGCT
R:
AGCAGTGCCAGGGATGAGATA
Band lengths:
143-195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]