GgaEX1046675 @ galGal3
Exon Skipping
Gene
ENSGALG00000011128 | Q5ZJ35_CHICK
Description
NA
Coordinates
chr7:22987684-23004081:-
Coord C1 exon
chr7:23004001-23004081
Coord A exon
chr7:23001326-23001377
Coord C2 exon
chr7:22987684-22987755
Length
52 bp
Sequences
Splice sites
3' ss Seq
CTTTGTTTCTGTTTCTCTAGAAA
3' ss Score
9.62
5' ss Seq
CAGGTTAGT
5' ss Score
8.02
Exon sequences
Seq C1 exon
GAAAGAAACTGCCATCTTCATTGTCAAAAAGTGGGAGTTGCTGCCGAGTTTGTTCTGCGATCACCTCTTGCTGAGCACCAG
Seq A exon
AAATATGGATAGACTTCTGCGACTTGGAGGAGGTATGCCTGGCCTGGGACAG
Seq C2 exon
GGGCCACCAACAGATGCTCCTGCGGTCGACACAGCGGAACAGGTTTATATCTCATCCCTGGCACTGCTGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011128-'4-7,'4-2,6-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.545 C2=0.292
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0139816=JAB=PU(12.3=58.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCAAAAAGTGGGAGTTGCTG
R:
TTTCAGCAGTGCCAGGGATGA
Band lengths:
132-184
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]