MmuEX0037548 @ mm10
Exon Skipping
Gene
ENSMUSG00000026914 | Psmd14
Description
proteasome (prosome, macropain) 26S subunit, non-ATPase, 14 [Source:MGI Symbol;Acc:MGI:1913284]
Coordinates
chr2:61720444-61760707:+
Coord C1 exon
chr2:61720444-61720571
Coord A exon
chr2:61722710-61722761
Coord C2 exon
chr2:61760636-61760707
Length
52 bp
Sequences
Splice sites
3' ss Seq
CCTTTGTTTCTGTTTTCTAGAAA
3' ss Score
10.48
5' ss Seq
CAGGTTAGT
5' ss Score
8.02
Exon sequences
Seq C1 exon
GAGAGAGAGGAAAAACTACTTGTGAAAAATTGTATCTGCCAGAATTAGCAAGACTTGGAGTTAATAACAAATTTGTCAAATTCAACAAATTGAAGTTTAACACTGTAAGAATTACAGTTACTGAACAG
Seq A exon
AAATATGGACAGACTTCTTAGACTTGGAGGAGGTATGCCTGGACTGGGCCAG
Seq C2 exon
GGCCCACCTACAGATGCTCCTGCCGTGGACACAGCAGAACAAGTTTATATCTCTTCCTTGGCCTTGCTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026914_MULTIEX1-3/4=1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.250 C2=0.250
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0139816=JAB=PU(12.3=58.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCAGAATTAGCAAGACTTGGA
R:
ACTTGTTCTGCTGTGTCCACG
Band lengths:
136-188
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types