HsaEX6016219 @ hg19
Exon Skipping
Gene
ENSG00000115233 | PSMD14
Description
proteasome (prosome, macropain) 26S subunit, non-ATPase, 14 [Source:HGNC Symbol;Acc:16889]
Coordinates
chr2:162172948-162224060:+
Coord C1 exon
chr2:162172948-162173080
Coord A exon
chr2:162175333-162175384
Coord C2 exon
chr2:162223989-162224060
Length
52 bp
Sequences
Splice sites
3' ss Seq
TCTTTGTTTCTGTTTTCTAGAAA
3' ss Score
10.42
5' ss Seq
CAGGTTAGT
5' ss Score
8.02
Exon sequences
Seq C1 exon
GAGAGAAAGAAAAAATAAAATATACTTGGGGAAGTTGTACCTGCCAGAATTAGCAAGAGCTTTCTTTAAGAAGACATTTGTCAAACTCAACAAATTGAAGGTTAACACCTTAAGAGTTGTAGTTACTGACCAG
Seq A exon
AAATATGGACAGACTTCTTAGACTTGGAGGAGGTATGCCTGGACTGGGCCAG
Seq C2 exon
GGGCCACCTACAGATGCTCCTGCAGTGGACACAGCAGAACAAGTCTATATCTCTTCCCTGGCACTGTTAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000115233-'2-7,'2-1,3-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.521 C2=0.292
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0139816=JAB=PU(12.3=58.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGGGGAAGTTGTACCTGCC
R:
GCAGGAGCATCTGTAGGTGG
Band lengths:
132-184
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)