RnoEX0070663 @ rn6
Exon Skipping
Gene
ENSRNOG00000061129 | Psmd14
Description
proteasome 26S subunit, non-ATPase 14 [Source:RGD Symbol;Acc:1594532]
Coordinates
chr3:47586659-47635294:+
Coord C1 exon
chr3:47586659-47586793
Coord A exon
chr3:47588929-47588980
Coord C2 exon
chr3:47635223-47635294
Length
52 bp
Sequences
Splice sites
3' ss Seq
CCTTTGTTTCTGTTTTCTAGAAA
3' ss Score
10.48
5' ss Seq
CAGGTTAGT
5' ss Score
8.02
Exon sequences
Seq C1 exon
GGAGAGAGAGAGAAAAAAAAAACTGCTTGTGGAAAATTGTATCTGCCAGAATTAGCAAGAATTGGAGTTAATAAGAAATTTGTCAAATTCAACAAATTGAAGCTTAACTCCATAAGAATTGCAGTTACTGAACAG
Seq A exon
AAATATGGACAGACTTCTTAGACTTGGAGGAGGTATGCCTGGACTGGGCCAG
Seq C2 exon
GGTCCACCTACAGATGCCCCTGCCGTAGACACAGCAGAACAAGTTTACATCTCCTCCTTGGCGTTGCTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000061129-'5-11,'5-3,6-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.250 C2=0.292
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0139816=JAB=PU(12.3=58.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTGTGGAAAATTGTATCTGCCA
R:
AGGGGCATCTGTAGGTGGAC
Band lengths:
132-184
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]