BtaEX6009538 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021691 | PSMD14
Description
Bos taurus proteasome (prosome, macropain) 26S subunit, non-ATPase, 14 (PSMD14), mRNA. [Source:RefSeq mRNA;Acc:NM_001076067]
Coordinates
chr2:35119421-35121909:-
Coord C1 exon
chr2:35121838-35121909
Coord A exon
chr2:35121491-35121610
Coord C2 exon
chr2:35119421-35119491
Length
120 bp
Sequences
Splice sites
3' ss Seq
GTGTATCGTCCTCTTTACAGATG
3' ss Score
10.87
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
GGGCCACCTACAGATGCTCCTGCAGTGGACACAGCAGAACAAGTCTATATCTCTTCCCTGGCACTGTTAAAA
Seq A exon
ATGTTAAAACATGGCCGAGCTGGAGTTCCAATGGAAGTTATGGGTCTTATGCTTGGAGAGTTTGTGGATGATTACACCGTCAGAGTGATTGATGTGTTTGCTATGCCGCAATCAGGAACA
Seq C2 exon
GGCGTCAGTGTGGAGGCAGTTGATCCAGTGTTCCAAGCTAAAATGTTGGATATGTTGAAGCAGACAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021691-'9-7,'9-6,10-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.292 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0139816=JAB=PU(12.3=58.3)
A:
PF0139816=JAB=FE(34.2=100)
C2:
PF0139816=JAB=FE(20.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCACCTACAGATGCTCCT
R:
TCCTGTCTGCTTCAACATATCCA
Band lengths:
140-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]