MmuEX0037549 @ mm10
Exon Skipping
Gene
ENSMUSG00000026914 | Psmd14
Description
proteasome (prosome, macropain) 26S subunit, non-ATPase, 14 [Source:MGI Symbol;Acc:MGI:1913284]
Coordinates
chr2:61760636-61763907:+
Coord C1 exon
chr2:61760636-61760707
Coord A exon
chr2:61760975-61761094
Coord C2 exon
chr2:61763837-61763907
Length
120 bp
Sequences
Splice sites
3' ss Seq
ATACATCTCCCTCTTTACAGATG
3' ss Score
10.25
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
Exon sequences
Seq C1 exon
GGCCCACCTACAGATGCTCCTGCCGTGGACACAGCAGAACAAGTTTATATCTCTTCCTTGGCCTTGCTAAAG
Seq A exon
ATGTTAAAACATGGTCGTGCTGGAGTGCCTATGGAAGTTATGGGTCTAATGCTTGGTGAATTTGTTGATGATTACACCGTCAGAGTGATTGATGTGTTTGCTATGCCACAGTCAGGAACT
Seq C2 exon
GGTGTCAGTGTTGAAGCAGTTGATCCAGTGTTCCAAGCCAAAATGTTGGATATGCTGAAACAAACAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026914-'27-17,'27-13,28-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.250 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0139816=JAB=PU(12.3=58.3)
A:
PF0139816=JAB=FE(34.2=100)
C2:
PF0139816=JAB=FE(20.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCACCTACAGATGCTCCT
R:
TCCTGTTTGTTTCAGCATATCCA
Band lengths:
140-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types