HsaEX6016217 @ hg38
Exon Skipping
Gene
ENSG00000115233 | PSMD14
Description
proteasome 26S subunit, non-ATPase 14 [Source:HGNC Symbol;Acc:HGNC:16889]
Coordinates
chr2:161367478-161370177:+
Coord C1 exon
chr2:161367478-161367549
Coord A exon
chr2:161367784-161367903
Coord C2 exon
chr2:161370107-161370177
Length
120 bp
Sequences
Splice sites
3' ss Seq
ACATCTCTTCCTTTCTACAGATG
3' ss Score
11.16
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
GGGCCACCTACAGATGCTCCTGCAGTGGACACAGCAGAACAAGTCTATATCTCTTCCCTGGCACTGTTAAAA
Seq A exon
ATGTTAAAACATGGCCGTGCTGGAGTTCCAATGGAAGTTATGGGTTTGATGCTTGGAGAATTTGTTGATGATTATACCGTCAGAGTGATTGATGTGTTTGCTATGCCACAGTCAGGAACA
Seq C2 exon
GGTGTCAGTGTGGAGGCAGTTGATCCAGTGTTCCAAGCTAAAATGTTGGATATGTTGAAGCAGACAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000115233_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.245 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0139816=JAB=PU(12.3=58.3)
A:
PF0139816=JAB=FE(34.2=100)
C2:
PF0139816=JAB=FE(20.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCACCTACAGATGCTCCT
R:
TCCTGTCTGCTTCAACATATCCA
Band lengths:
140-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains