GgaEX1046677 @ galGal4
Exon Skipping
Gene
ENSGALG00000011128 | PSMD14
Description
26S proteasome non-ATPase regulatory subunit 14 [Source:RefSeq peptide;Acc:NP_001026427]
Coordinates
chr7:20885335-20899958:-
Coord C1 exon
chr7:20899887-20899958
Coord A exon
chr7:20899433-20899552
Coord C2 exon
chr7:20885335-20885442
Length
120 bp
Sequences
Splice sites
3' ss Seq
TTATTTTGTCTTCATTCCAGATG
3' ss Score
10.17
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
Exon sequences
Seq C1 exon
GGGCCACCAACAGATGCTCCTGCGGTCGACACAGCGGAACAGGTTTATATCTCATCCCTGGCACTGCTGAAA
Seq A exon
ATGTTGAAACATGGTCGTGCTGGTGTCCCTATGGAAGTTATGGGGCTGATGCTTGGGGAATTTGTTGATGATTACACTGTAAGAGTGATTGATGTTTTTGCTATGCCACAGTCTGGAACG
Seq C2 exon
GTTGTTATTGATGCCTTCAGATTGATCAATGCTAATATGATGGTCTTGGGACATGAACCAAGACAAACAACTTCAAATCTGGGTCACTTAAACAAGCCATCTATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011128_MULTIEX1-4/6=3-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.292 A=0.000 C2=0.194
Domain overlap (PFAM):
C1:
PF0139816=JAB=PU(12.3=58.3)
A:
PF0139816=JAB=FE(34.2=100)
C2:
PF130121=MitMem_reg=PU(14.5=50.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCACCAACAGATGCTCC
R:
TGGATAGATGGCTTGTTTAAGTGACC
Band lengths:
178-298
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]