RnoEX6017033 @ rn6
Exon Skipping
Gene
ENSRNOG00000061129 | Psmd14
Description
proteasome 26S subunit, non-ATPase 14 [Source:RGD Symbol;Acc:1594532]
Coordinates
chr3:47635223-47638392:+
Coord C1 exon
chr3:47635223-47635294
Coord A exon
chr3:47635524-47635643
Coord C2 exon
chr3:47638322-47638392
Length
120 bp
Sequences
Splice sites
3' ss Seq
AATTATCTTCCTCTTTACAGATG
3' ss Score
10.91
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
Exon sequences
Seq C1 exon
GGTCCACCTACAGATGCCCCTGCCGTAGACACAGCAGAACAAGTTTACATCTCCTCCTTGGCGTTGCTAAAG
Seq A exon
ATGTTAAAACATGGCCGTGCTGGGGTTCCTATGGAAGTTATGGGTCTAATGCTTGGCGAATTTGTTGATGATTACACCGTCAGAGTGATTGATGTGTTTGCTATGCCACAATCAGGAACT
Seq C2 exon
GGTGTCAGTGTAGAAGCAGTTGATCCAGTGTTCCAAGCCAAAATGTTGGATATGCTGAAACAAACAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000061129-'14-14,'14-13,15-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.292 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0139816=JAB=PU(12.3=58.3)
A:
PF0139816=JAB=FE(34.2=100)
C2:
PF0139816=JAB=FE(20.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCACCTACAGATGCCCCT
R:
TCCTGTTTGTTTCAGCATATCCA
Band lengths:
140-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]